Lesson 2 of 4 / Enzymes and investigations
Explain an optimum, not just a peak
Why does warming first help and then harm?
I can explain temperature and pH effects on enzyme-catalysed rates using molecular interactions.
I can investigate and explain temperature, pH, enzyme and substrate concentration effects using rate measurements.Syllabus
Syllabus 8876, Core 1(o). Investigate and explain temperature, pH, enzyme and substrate concentration effects using rate measurements.
About 5 min
Make a guess. You are not marked.
An enzyme stops working at 0 degrees C. Has the cold denatured it?
Show the answer
Cold slows it; warming restores activity.
Cold lowers kinetic energy and collisions. The active site keeps its shape, unlike after high heat.
The key idea
Below the optimum, more kinetic energy raises the frequency of effective collisions. Above it, the enzyme is denatured and the 3D shape of the active site changes. pH changes the charges that hold the shape and bind the substrate.
Explore the idea
Read the shape, then explain it
Relative rate: 6 in this original data set. Increasing temperature can increase productive molecular encounters while the enzyme remains stable.
These are invented practice measurements. Joining points guides the eye; it does not establish the exact optimum between tested conditions.
Explanation
Enzymes act only in solution, where enzyme and substrate molecules can move and collide. An effective collision is one in which the substrate binds to the active site and an enzyme-substrate complex forms. As temperature rises towards the optimum, enzyme and substrate molecules gain kinetic energy. The frequency of effective collisions increases, so enzyme-substrate complexes form more often and the rate rises.
Above the optimum, the extra kinetic energy makes the enzyme vibrate enough to break the hydrogen bonds and ionic bonds that hold its 3D shape. The 3D shape of the active site changes, so the substrate is no longer complementary to it. The enzyme is denatured, fewer enzyme-substrate complexes form and the rate falls, even though collisions are more frequent. The measured optimum depends on the enzyme, assay conditions and duration; a sparse set of tested temperatures does not locate it exactly.
pH affects ionisation of groups in the enzyme and sometimes the substrate. Changed charge can break ionic bonds and hydrogen bonds that hold the 3D shape of the active site, or change the charge of groups that bind the substrate, so fewer enzyme-substrate complexes form. Extreme pH may denature the protein. Different enzymes have different suitable pH ranges.
Compare results at a fixed temperature when testing pH and at fixed pH when testing temperature. A low rate alone does not identify the cause: too little enzyme, depleted substrate or an unsuitable assay could also produce it.
Step by step
- 1
Describe the trend
Use data values before suggesting the mechanism.
- 2
Explain the rising and falling regions separately
Increased molecular motion and structural disruption are different effects.
- 3
Limit the conclusion
Report the fastest tested condition, not an exact unmeasured optimum.
Worked example
The fastest tested temperature
Relative rates at 20, 30, 40 and 50 degrees C are 3, 6, 10 and 4. What can be concluded about the optimum?
One way to explain it
40 degrees C gives the highest rate among the temperatures tested. The exact optimum may lie between tested values, so more closely spaced measurements are needed to locate it.
Why this answer works
- Distinguish a measured maximum from the underlying curve maximum.
- Do not infer a universal optimum for all enzymes.
Watch out for this
A student says: "Low temperature normally denatures the enzyme in the same way as high temperature." What is wrong with this?
Show the answer
Low temperature usually slows motion and reaction reversibly. High-temperature loss of folding is a different mechanism.
Check your understanding
A high-temperature rate falls. Which explanation is appropriate?
Show the answer
The enzyme is denatured, so the 3D shape of the active site is no longer complementary to the substrate.
Fewer enzyme-substrate complexes form, which outweighs the higher frequency of collisions.
Quick recall
Why does warming first help and then harm?